SJCC operates through a decentralized and participatory system in alignment with its vision, mission, and policies. Each year, comprehensive action plans and budgets are developed, integrating inputs from the management, administration, departments, clubs, and forums before the academic year begins.

• The SJCC Trust, chaired by the Archbishop of Changanassery, oversees the institution's development and improvement by defining its mission and vision. The Archbishop also serves as the patron of the college and is responsible for appointing the Principal, Executive Director, and Bursar.
• The governing body of SJCC comprises a diverse group of members, including representatives from local communities and heads of neighbouring educational institutions, who work together to shape the institution's policies and direction.
• The college also has an academic council consisting of external industry experts and professionals.
• The staff council, which includes the Principal, select staff members, and Heads of Departments, makes crucial administrative and academic decisions.
• Regular staff meetings at the departments, club, cell, and forum executive meetings are held for task setting and program evaluation.
• The student union is elected through a parliamentary system and participates in the decision-making process.
• The IQAC works hand in hand with the management to develop a robust system that ensures the quality and excellence of the institution.

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